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Publications information icon

Insight into activation and RNA binding of trp RNA-binding attenuation protein (TRAP) through all-atom simulations

Peer-reviewed
DOI
10.1002/prot.21878
Murtola, Teemu; Vattulainen, Ilpo; Falck, E.
PROTEINS: STRUCTURE FUNCTION AND BIOINFORMATICS2008Publications information icon

A probabilistic model for competitive binding of transcription factors

Peer-reviewed
Laurila, Kirsti; Lähdesmäki, Harri
-2009Publications information icon

Protein-protein interactions improve multiple transcription factor binding site prediction

Laurila, Kirsti; Pukkila, Heidi; Yli-Harja, Olli; Lähdesmäki, Harri
-2009Publications information icon

A probabilistic model for competitive binding of transcription factors

Laurila, Kirsti; Lähdesmäki, Harri
-2009Publications information icon

Modeling binding specificities of transcription factor pairs with random forests

Peer-reviewed
Open access
DOI
10.1186/s12859-022-04734-7
Antikainen, Anni A.; Heinonen, Markus; Lähdesmäki, Harri
Bmc bioinformatics2022Publications information icon

Binding specificities of human RNA-binding proteins toward structured and linear RNA sequences

Peer-reviewed
Open access
DOI
10.1101/gr.258848.119
Jolma, Arttu; Zhang, Jilin; Mondragon, Estefania; Morgunova, Ekaterina; Kivioja, Teemu; Laverty, Kai...
Genome Research2020Publications information icon

CGGBP1-dependent CTCF-binding sites restrict ectopic transcription

Peer-reviewed
Open access
DOI
10.1080/15384101.2021.1982508
Patel, Divyesh; Patel, Manthan; Datta, Subhamoy; Singh, Umashankar
Cell Cycle2021Publications information icon

Disentangling transcription factor binding site complexity

Peer-reviewed
Open access
DOI
10.1093/nar/gky683
Eggeling, Ralf
Nucleic Acids Research2018Publications information icon

Systematic analysis of disease-related regulatory mutation classes reveals distinct effects on transcription factor binding

Peer-reviewed
Laurila, Kirsti; Lähdesmäki, Harri
In Silico Biology2009Publications information icon

Eight-element polarisation independent transmission trap detector with high attenuation

Peer-reviewed
Open access
DOI
10.1088/1681-7575/ada7fd
Vaigu, Aigar; Kubarsepp, Toomas; Ikonen, Erkki
Metrologia2025

Insight into activation and RNA binding of trp RNA-binding attenuation protein (TRAP) through all-atom simulations

Peer-reviewed
DOI
10.1002/prot.21878
2008

A probabilistic model for competitive binding of transcription factors

Peer-reviewed
2009

Protein-protein interactions improve multiple transcription factor binding site prediction

2009

A probabilistic model for competitive binding of transcription factors

2009

Modeling binding specificities of transcription factor pairs with random forests

Peer-reviewed
Open access
DOI
10.1186/s12859-022-04734-7
2022

Binding specificities of human RNA-binding proteins toward structured and linear RNA sequences

Peer-reviewed
Open access
DOI
10.1101/gr.258848.119
2020

CGGBP1-dependent CTCF-binding sites restrict ectopic transcription

Peer-reviewed
Open access
DOI
10.1080/15384101.2021.1982508
2021

Disentangling transcription factor binding site complexity

Peer-reviewed
Open access
DOI
10.1093/nar/gky683
2018

Systematic analysis of disease-related regulatory mutation classes reveals distinct effects on transcription factor binding

Peer-reviewed
2009

Eight-element polarisation independent transmission trap detector with high attenuation

Peer-reviewed
Open access
DOI
10.1088/1681-7575/ada7fd
2025